Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Noca_4498KEGG: fal:FRAAL6618 hypothetical protein. (272 aa)    
Predicted Functional Partners:
Noca_4497
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tfu:Tfu_1436 ABC-type multidrug transport system ATPase component.
 
 
 0.963
Noca_1320
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tfu:Tfu_1436 ABC-type multidrug transport system ATPase component.
 
 
 0.840
Noca_1021
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tfu:Tfu_1436 ABC-type multidrug transport system ATPase component.
 
 
 0.836
Noca_1319
PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, dimerisation and phosphoacceptor region; KEGG: sma:SAV1990 two-component system sensor kinase.
 
     0.693
Noca_4499
PFAM: sigma-70 region 2 domain protein; Sigma-70, region 4 type 2; KEGG: tfu:Tfu_0455 sigma subunit sigma24 -like protein; Belongs to the sigma-70 factor family. ECF subfamily.
  
    0.600
Noca_4496
PFAM: protein kinase; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: tfu:Tfu_0454 tyrosine protein kinase:serine/threonine protein kinase.
  
    0.560
Noca_1657
Transcriptional regulator, CdaR family; KEGG: fra:Francci3_3797 hypothetical protein.
  
     0.545
Noca_0892
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sco:SCO1742 putative ABC-transporter ATP-binding protein.
 
 
 0.497
Noca_0249
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sco:SCO6360 ABC transporter ATP-binding protein.
 
 
 0.486
Noca_4447
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sma:SAV4248 putative ABC transporter ATP-binding protein.
 
 
 0.460
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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