Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Noca_4522KEGG: nfa:nfa5300 hypothetical protein. (284 aa)    
Predicted Functional Partners:
Noca_4521
Hypothetical protein.
       0.718
Noca_4523
Aminotransferase; TIGRFAM: ornithine aminotransferase; PFAM: aminotransferase class-III; KEGG: mmc:Mmcs_0992 ornithine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
     
 0.709
Noca_4519
PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: nfa:nfa49640 putative two-component system response regulator.
       0.660
Noca_4520
PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: rha:RHA1_ro05623 sensor kinase, two-component system.
       0.660
Noca_3478
PFAM: cyclase/dehydrase; KEGG: mmc:Mmcs_4470 hypothetical protein.
  
     0.584
Noca_4518
PFAM: aminoglycoside phosphotransferase; fructosamine kinase; KEGG: tfu:Tfu_2340 hypothetical protein.
  
    0.499
Noca_4288
PFAM: thioesterase superfamily protein; KEGG: mmc:Mmcs_2763 thioesterase superfamily.
  
   
 0.496
Noca_4516
PFAM: membrane protein of unknown function; KEGG: sma:SAV4271 hypothetical protein.
       0.484
Noca_4517
PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: tfu:Tfu_2341 protein-tyrosine-phosphatase.
       0.484
Noca_0670
KEGG: sco:SCO4636 hypothetical protein.
  
 
 0.435
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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