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Noca_4535 protein (Nocardioides sp. JS614) - STRING interaction network
"Noca_4535" - RNA polymerase sigma factor SigK in Nocardioides sp. JS614
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_4535RNA polymerase sigma factor SigK (200 aa)    
Predicted Functional Partners:
Noca_4536
Hypothetical protein (250 aa)
 
          0.968
Noca_4537
Hypothetical protein (667 aa)
 
          0.950
Noca_4534
beta-Ig-H3/fasciclin (217 aa)
 
          0.902
Noca_4538
Cyclopropane-fatty-acyl-phospholipid synthase (415 aa)
 
          0.902
Noca_4539
Hypothetical protein (260 aa)
 
          0.894
Noca_1676
Sigma-70 region 2 domain-containing protein (174 aa)
   
          0.772
Noca_1677
Hypothetical protein (239 aa)
     
 
  0.747
Noca_4499
Sigma-70 region 2 domain-containing protein (188 aa)
   
          0.714
Noca_4533
Oxidoreductase (508 aa)
 
     
  0.629
Noca_0778
Deoxyribodipyrimidine photo-lyase type I (453 aa)
 
     
  0.545
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614, Nocardioides, Nocardioides JS614, Nocardioides sp. JS614
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