STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_4537PFAM: amine oxidase; FAD dependent oxidoreductase; protein of unknown function DUF1365; KEGG: rha:RHA1_ro02557 possible amine oxidase. (667 aa)    
Predicted Functional Partners:
Noca_4538
PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; Methyltransferase type 11; Methyltransferase type 12; KEGG: rha:RHA1_ro02559 cyclopropane-fatty-acyl-phospholipid synthase.
  
 0.997
Noca_4539
PFAM: protein of unknown function DUF1295; KEGG: rha:RHA1_ro02561 possible membrane protein.
    0.984
Noca_4534
PFAM: beta-Ig-H3/fasciclin; KEGG: sco:SCO0638 lipoprotein.
 
  
 0.911
Noca_4536
KEGG: sco:SCO0633 hypothetical protein.
 
   
 0.911
Noca_1917
PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; Methyltransferase type 11; Methyltransferase type 12; KEGG: rha:RHA1_ro04207 cyclopropane-fatty-acyl-phospholipid synthase.
  
 0.891
Noca_4535
RNA polymerase, sigma subunit, ECF family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: lxx:Lxx18470 RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
 
  
 0.876
Noca_0778
Deoxyribodipyrimidine photo-lyase type I; PFAM: DNA photolyase, FAD-binding; DNA photolyase domain protein; KEGG: fal:FRAAL0101 deoxyribodipyrimidine photolyase (DNA photolyase) (photoreactivating enzyme).
 
  
 0.718
Noca_0576
Protein of unknown function DUF1486; PFAM: NAD-dependent epimerase/dehydratase; NmrA family protein; protein of unknown function DUF1486; KEGG: nfa:nfa29880 hypothetical protein.
     
 0.668
Noca_3723
KEGG: sco:SCO0635 hypothetical protein.
 
     0.663
Noca_0255
PFAM: major facilitator superfamily MFS_1; KEGG: sma:SAV5597 hypothetical protein.
  
  
 0.649
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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