STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_4544PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: hne:HNE_0194 NADH:flavin oxidoreductase/NADH oxidase family protein. (355 aa)    
Predicted Functional Partners:
Noca_4040
PFAM: transcription factor CarD; KEGG: pac:PPA0357 putative transcriptional regulator.
   
    0.632
Noca_4545
PFAM: GCN5-related N-acetyltransferase; KEGG: sco:SCO2876 acetyltransferase.
 
     0.559
tuf
Translation elongation factor 1A (EF-1A/EF-Tu); This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.
   
    0.547
Noca_2989
SSU ribosomal protein S1P; PFAM: RNA binding S1 domain protein; KEGG: tfu:Tfu_1191 RNA binding S1.
   
    0.526
Noca_2869
PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; KEGG: tfu:Tfu_0384 cold shock protein.
   
  
 0.471
Noca_4269
PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; KEGG: sco:SCO4505 cold shock protein.
   
  
 0.471
Noca_2183
PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: fra:Francci3_4105 alcohol dehydrogenase, zinc-binding.
 
  
 0.415
Noca_0280
(S)-2-hydroxy-acid oxidase; PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase; KEGG: nfa:nfa32960 putative L-lactate dehydrogenase.
  
  
 0.409
Noca_1980
PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase; ferredoxin-dependent glutamate synthase; KEGG: dra:DR1031 (S)-2-hydroxy-acid oxidase.
  
  
 0.409
Noca_3322
PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: pto:PTO1249 alcohol dehydrogenase.
 
  
 0.400
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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