STRINGSTRING
Noca_4548 protein (Nocardioides sp. JS614) - STRING interaction network
"Noca_4548" - Ribonuclease BN in Nocardioides sp. JS614
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_4548Ribonuclease BN (349 aa)    
Predicted Functional Partners:
Noca_4549
DNA polymerase IV; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3’-5’ exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII (419 aa)
              0.859
Noca_4547
Type 11 methyltransferase (254 aa)
              0.810
Noca_2783
Hypothetical protein (170 aa)
   
          0.629
Noca_2519
Hypothetical protein (100 aa)
   
          0.627
Noca_4152
Hypothetical protein (201 aa)
   
          0.611
Noca_4551
Carbamoyl-phosphate synthase subunit L (633 aa)
              0.563
Noca_4550
acyl-CoA dehydrogenase domain-containing protein (386 aa)
              0.563
Noca_2354
Ribonuclease BN (327 aa)
   
   
    0.527
Noca_3478
Cyclase/dehydrase (160 aa)
   
          0.505
Noca_1983
Alpha/beta hydrolase fold protein (310 aa)
   
          0.485
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614, Nocardioides, Nocardioides JS614, Nocardioides sp. JS614
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