STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_4568PFAM: CsbD family protein; KEGG: rha:RHA1_ro04155 hypothetical protein; Belongs to the UPF0337 (CsbD) family. (64 aa)    
Predicted Functional Partners:
Noca_0878
PFAM: pyridoxamine 5'-phosphate oxidase-related, FMN-binding; KEGG: fal:FRAAL1971 conserved hypothetical protein; putative FMN-binding split barrel domain.
 
    0.709
Noca_2812
PFAM: pyridoxamine 5'-phosphate oxidase-related, FMN-binding; KEGG: nfa:nfa42140 hypothetical protein.
  
    0.667
Noca_4058
PFAM: pyridoxamine 5'-phosphate oxidase-related, FMN-binding; KEGG: rha:RHA1_ro05058 hypothetical protein.
  
    0.667
Noca_2570
PFAM: protein of unknown function DUF1458; KEGG: sco:SCO0915 hypothetical protein.
   
    0.645
Noca_1866
KEGG: rha:RHA1_ro04434 hypothetical protein.
 
    0.614
Noca_4569
PFAM: FAD dependent oxidoreductase; KEGG: rha:RHA1_ro02919 flavin binding monooxygenase.
       0.611
Noca_2492
KEGG: pac:PPA0096 hypothetical protein.
 
    0.609
Noca_1404
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: lxx:Lxx05010 lipopolysaccharide exporter.
  
    0.605
Noca_2722
PFAM: protein of unknown function DUF1501; KEGG: sus:Acid_4681 protein of unknown function DUF1501.
  
    0.579
Noca_2302
PFAM: dihydrodipicolinate reductase; NAD-dependent epimerase/dehydratase; domain of unknown function DUF1731; KEGG: nfa:nfa16890 putative epimerase.
   
    0.568
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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