STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_4569PFAM: FAD dependent oxidoreductase; KEGG: rha:RHA1_ro02919 flavin binding monooxygenase. (479 aa)    
Predicted Functional Partners:
Noca_4571
PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: sma:SAV1682 fatty acid-CoA racemase; Belongs to the CoA-transferase III family.
 
     0.726
Noca_4570
PFAM: glutamine amidotransferase class-I; KEGG: jan:Jann_1856 glutamine amidotransferase class-I.
  
    0.655
Noca_1064
PFAM: alpha/beta hydrolase fold; KEGG: rpc:RPC_1656 alpha/beta hydrolase fold.
 
 0.626
Noca_4568
PFAM: CsbD family protein; KEGG: rha:RHA1_ro04155 hypothetical protein; Belongs to the UPF0337 (CsbD) family.
       0.611
Noca_0783
PFAM: Saccharopine dehydrogenase; KEGG: sma:SAV1683 hypothetical protein.
 
   
 0.606
Noca_3699
PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: rha:RHA1_ro06007 short chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
   
 0.601
Noca_3509
KEGG: rha:RHA1_ro03056 hypothetical protein.
  
     0.554
Noca_4562
PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 6-phosphogluconate dehydrogenase, NAD-binding; 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; KEGG: mpa:MAP0790 enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase / 3-hydroxybutyryl-CoA epimerase.
 
 
 
 0.534
Noca_0592
PFAM: monooxygenase, FAD-binding; KEGG: bur:Bcep18194_A4962 hypothetical protein.
 
 
 0.528
Noca_3706
Diacylglycerol O-acyltransferase; PFAM: protein of unknown function UPF0089; KEGG: rha:RHA1_ro08645 hypothetical protein; Belongs to the long-chain O-acyltransferase family.
 
 
 0.514
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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