STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_4571PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: sma:SAV1682 fatty acid-CoA racemase; Belongs to the CoA-transferase III family. (385 aa)    
Predicted Functional Partners:
Noca_4126
PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: rha:RHA1_ro08152 probable fatty acid-CoA racemase; Belongs to the CoA-transferase III family.
  
  
 
0.917
Noca_0812
PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: bxe:Bxe_C0282 alpha-methylacyl-CoA racemase; Belongs to the CoA-transferase III family.
  
  
 
0.908
Noca_4570
PFAM: glutamine amidotransferase class-I; KEGG: jan:Jann_1856 glutamine amidotransferase class-I.
       0.773
Noca_4569
PFAM: FAD dependent oxidoreductase; KEGG: rha:RHA1_ro02919 flavin binding monooxygenase.
 
     0.726
Noca_4568
PFAM: CsbD family protein; KEGG: rha:RHA1_ro04155 hypothetical protein; Belongs to the UPF0337 (CsbD) family.
       0.512
Noca_4128
PFAM: acyl-CoA dehydrogenase domain protein; KEGG: fal:FRAAL3878 putative acyl-CoA dehydrogenase.
 
 
 0.413
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
Server load: medium (54%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.