STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_4576PFAM: transcriptional regulator PadR family protein; KEGG: nfa:nfa12910 putative transcriptional regulator. (181 aa)    
Predicted Functional Partners:
Noca_4577
PFAM: NADH:flavin oxidoreductase/NADH oxidase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: rha:RHA1_ro01415 2,4-dienoyl-CoA reductase (NADPH).
 
    0.835
Noca_4578
Aminotransferase, class I and II; PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; aminotransferase, class I and II; KEGG: rha:RHA1_ro08885 probable aminotransferase.
       0.752
Noca_4575
PFAM: extracellular solute-binding protein, family 3; KEGG: sma:SAV6283 putative amino acid ABC transporter, periplasmic amino acid-binding protein; TC 3.A.1.3.-.
       0.547
Noca_4579
PFAM: UDP-glucose/GDP-mannose dehydrogenase; KEGG: sma:SAV5025 putative UDP-glucose 6-dehydrogenase.
       0.521
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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