Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Noca_4585KEGG: mes:Meso_0486 hypothetical protein. (330 aa)    
Predicted Functional Partners:
Noca_4583
PFAM: glycosyl transferase, family 2; KEGG: tfu:Tfu_1639 similar to glycosyltransferase.
 
     0.879
Noca_4584
PFAM: glycosyl transferase, family 2; KEGG: dsy:DSY3936 hypothetical protein.
 
     0.819
Noca_4580
Hypothetical protein; KEGG: cac:CAC1615 predicted glycosyltransferase.
 
     0.783
Noca_4582
KEGG: rxy:Rxyl_3097 hypothetical protein.
       0.774
Noca_4581
KEGG: rxy:Rxyl_3098 hypothetical protein.
       0.773
Noca_4586
Hypothetical protein.
 
     0.636
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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