STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_4591PFAM: regulatory protein, TetR; KEGG: sco:SCO0669 TetR-family transcriptional regulator. (200 aa)    
Predicted Functional Partners:
Noca_4592
PFAM: FAD dependent oxidoreductase; KEGG: sco:SCO0670 glycerol-3-phosphate dehydrogenase.
 
   
 0.872
Noca_4590
PFAM: FAD linked oxidase domain protein; KEGG: sco:SCO0668 putative flavoprotein.
 
     0.796
Noca_4594
KEGG: fal:FRAAL4123 hypothetical protein.
 
     0.779
Noca_4589
PFAM: diacylglycerol kinase, catalytic region; KEGG: sco:SCO0667 secreted protein.
 
     0.719
Noca_4593
RNA polymerase, sigma subunit, ECF family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: rha:RHA1_ro05361 sigma factor, sigma 70 type, group 4; Belongs to the sigma-70 factor family. ECF subfamily.
 
     0.693
Noca_4588
Hypothetical protein; KEGG: lma:LmjF35.0540 proteophosphoglycan 5.
       0.563
Noca_2858
KEGG: sco:SCO2134 hypothetical protein.
  
     0.451
Noca_4595
PFAM: regulatory protein, LuxR; KEGG: sco:SCO4263 transcriptional regulatory protein.
       0.443
Noca_2606
KEGG: rha:RHA1_ro05489 hypothetical protein.
  
     0.436
Noca_2812
PFAM: pyridoxamine 5'-phosphate oxidase-related, FMN-binding; KEGG: nfa:nfa42140 hypothetical protein.
  
    0.404
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.