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Noca_4593 protein (Nocardioides sp. JS614) - STRING interaction network
"Noca_4593" - RNA polymerase factor sigma-70 in Nocardioides sp. JS614
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_4593RNA polymerase factor sigma-70 (365 aa)    
Predicted Functional Partners:
Noca_4594
Hypothetical protein (187 aa)
              0.861
Noca_1677
Hypothetical protein (239 aa)
 
 
 
  0.777
Noca_4499
Sigma-70 region 2 domain-containing protein (188 aa)
   
          0.713
Noca_2090
Sigma-70 region 2 domain-containing protein (187 aa)
   
          0.712
Noca_4592
FAD dependent oxidoreductase (523 aa)
              0.660
Noca_4591
Regulatory protein TetR (200 aa)
              0.659
Noca_4595
Regulatory protein LuxR (336 aa)
              0.644
rpoC
DNA-directed RNA polymerase subunit beta’; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1290 aa)
       
 
  0.536
Noca_4445
ABC transporter-like protein (313 aa)
 
          0.517
Noca_4590
FAD linked oxidase domain-containing protein (518 aa)
              0.513
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614, Nocardioides, Nocardioides JS614, Nocardioides sp. JS614
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