STRINGSTRING
deaD protein (Nocardioides sp. JS614) - STRING interaction network
"deaD" - DEAD/DEAH box helicase in Nocardioides sp. JS614
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
deaDDEAD/DEAH box helicase; DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation (589 aa)    
Predicted Functional Partners:
pnp
Polynucleotide phosphorylase/polyadenylase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3’- to 5’-direction (742 aa)
   
 
  0.873
Noca_0133
DEAD/DEAH box helicase (714 aa)
 
0.850
eno
Phosphopyruvate hydratase; Catalyzes the reversible conversion of 2- phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis (425 aa)
   
 
  0.823
rplR
50S ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance (127 aa)
 
  0.820
rpmD
50S ribosomal protein L30 (60 aa)
   
  0.809
rplA
50S ribosomal protein L1P; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release (259 aa)
   
  0.809
Noca_3692
ATP-dependent helicase HrpA (1282 aa)
     
  0.809
Noca_0038
Hypothetical protein (238 aa)
     
 
  0.802
Noca_4269
Cold-shock DNA-binding protein family protein (67 aa)
   
  0.799
Noca_2869
Cold-shock DNA-binding protein family protein (67 aa)
   
  0.799
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614, Nocardioides, Nocardioides JS614, Nocardioides sp. JS614
Server load: low (9%) [HD]