STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_4603KEGG: sco:SCO2788 hypothetical protein. (95 aa)    
Predicted Functional Partners:
Noca_4602
Glutamine--fructose-6-phosphate transaminase; TIGRFAM: glucosamine--fructose-6-phosphate aminotransferase, isomerizing; PFAM: glutamine amidotransferase, class-II; sugar isomerase (SIS); KEGG: sco:SCO2789 glucosamine-fructose-6-phosphate aminotransferase.
 
     0.828
Noca_4604
Hypothetical protein.
       0.538
Noca_0188
PFAM: regulatory protein, LuxR; Helix-turn-helix, type 11 domain protein; Sigma-70, region 4 type 2; KEGG: sma:SAV86 erythropoiesis-stimulating protein.
  
     0.513
Noca_4463
PFAM: major facilitator superfamily MFS_1; KEGG: sma:SAV4232 hypothetical protein.
  
     0.507
Noca_4022
KEGG: sma:SAV6915 hypothetical protein.
  
     0.494
Noca_0123
PFAM: regulatory protein, TetR; KEGG: mmc:Mmcs_3220 transcriptional regulator, TetR family.
  
     0.439
Noca_3472
PFAM: GCN5-related N-acetyltransferase; KEGG: nfa:nfa46710 putative acetyltransferase.
  
     0.417
Noca_0320
KEGG: sma:SAV4558 hypothetical protein.
  
     0.409
Noca_4160
PFAM: cell wall hydrolase/autolysin; KEGG: fra:Francci3_1357 cell wall hydrolase/autolysin.
  
     0.409
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.