STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_4608PFAM: Na+/solute symporter; KEGG: sma:SAV3025 putative proline permease; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family. (547 aa)    
Predicted Functional Partners:
Noca_4609
KEGG: sma:SAV3024 hypothetical protein.
       0.838
Noca_0088
PFAM: Proline dehydrogenase; KEGG: tfu:Tfu_0434 proline dehydrogenase.
  
  
 0.693
Noca_0480
PFAM: Proline dehydrogenase; KEGG: tfu:Tfu_0434 proline dehydrogenase.
  
  
 0.693
Noca_1785
PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: sma:SAV5186 sugar transport protein.
  
  
 0.664
apt
Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.
   
  
 0.627
Noca_4607
PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: sco:SCO1209 putative acyl-CoA dehydrogenase.
       0.574
Noca_1977
KEGG: mca:MCA1204 sensory box histidine kinase/response regulator; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; Hpt domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein.
  
  
 0.535
Noca_2978
LamB/YcsF family protein; Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate.
  
    0.515
Noca_2589
Amino acid/polyamine/organocation transporter, APC superfamily; PFAM: amino acid permease-associated region; KEGG: sco:SCO4097 amino acid/metabolite permease; TC 2.A.3.
 
 
 0.498
Noca_3012
Amino acid ABC transporter ATP-binding protein, PAAT family; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sma:SAV6402 putative ABC transporter ATP-binding protein; TC 3.A.1.3.-.
  
  
 0.487
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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