STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_4625Transcriptional regulator, CdaR family; PFAM: purine catabolism PurC domain protein; KEGG: rha:RHA1_ro04467 possible transcriptional regulator. (535 aa)    
Predicted Functional Partners:
Noca_4628
PFAM: FAD dependent oxidoreductase; KEGG: rha:RHA1_ro05390 hypothetical protein.
 
     0.732
Noca_0087
Transcriptional regulator, CdaR family; KEGG: sma:SAV2725 transcriptional regulator.
 
     0.617
Noca_4626
TIGRFAM: methylmalonate-semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase; KEGG: mmc:Mmcs_0348 methylmalonate-semialdehyde dehydrogenase.
       0.572
Noca_4627
PFAM: aminotransferase class-III; KEGG: mmc:Mmcs_0347 aminotransferase class-III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
       0.563
Noca_1111
KEGG: pae:PA1915 hypothetical protein.
  
     0.538
Noca_0097
Regulator of polyketide synthase expression-like protein; KEGG: sco:SCO1052 regulatory protein.
  
     0.525
Noca_1113
PFAM: FAD dependent oxidoreductase; KEGG: tfu:Tfu_2058 hypothetical protein.
 
     0.519
Noca_2674
KEGG: tfu:Tfu_1967 hypothetical protein.
  
     0.433
Noca_4276
Transcriptional regulator, CdaR family; KEGG: rha:RHA1_ro04370 hypothetical protein.
 
     0.433
Noca_2812
PFAM: pyridoxamine 5'-phosphate oxidase-related, FMN-binding; KEGG: nfa:nfa42140 hypothetical protein.
  
     0.420
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.