Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Noca_4636Hypothetical protein. (287 aa)    
Predicted Functional Partners:
Noca_4637
PFAM: GCN5-related N-acetyltransferase; KEGG: fal:FRAAL3248 putative acetyltransferase.
       0.578
Noca_4633
Carbohydrate ABC transporter membrane protein 2, CUT1 family; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: lmf:LMOf2365_0191 sugar ABC transporter, permease protein; TC 3.A.1.1.-.
       0.548
Noca_4634
Carbohydrate ABC transporter membrane protein 1, CUT1 family; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: lin:lin0218 similar to sugar ABC transporters, permease proteins; TC 3.A.1.1.-.
  
    0.548
Noca_4635
PFAM: ROK family protein; KEGG: sma:SAV1081 ROK-family transcriptional regulator.
       0.543
Noca_4632
PFAM: extracellular solute-binding protein, family 1; KEGG: lmo:lmo0181 similar to sugar ABC transporter, sugar-binding protein; TC 3.A.1.1.-.
  
    0.438
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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