STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_4643PFAM: Sigma-70, region 4 type 2; KEGG: rpa:RPA1819 RNA polymerase ECF-type sigma factor, possible FecI. (217 aa)    
Predicted Functional Partners:
Noca_4644
Hypothetical protein.
       0.832
Noca_4642
Hypothetical protein.
       0.804
Noca_4645
PFAM: Patatin; KEGG: rha:RHA1_ro01898 possible lipid acyl hydrolase.
       0.752
Noca_4640
KEGG: btk:BT9727_2577 hypothetical protein.
 
     0.626
Noca_4646
PFAM: protein of unknown function DUF488; KEGG: nha:Nham_3631 protein of unknown function DUF488.
       0.576
Noca_4641
Hypothetical protein.
       0.556
Noca_3353
KEGG: rha:RHA1_ro04235 possible membrane protein.
 
     0.512
Noca_1122
Hypothetical protein; KEGG: eba:ebA1616 general secretion protein H.
  
     0.500
Noca_4647
PFAM: NC domain protein; KEGG: syf:Synpcc7942_2528 hypothetical protein.
  
  
 0.482
Noca_1475
Hypothetical protein.
  
     0.429
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.