Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Noca_4645PFAM: Patatin; KEGG: rha:RHA1_ro01898 possible lipid acyl hydrolase. (310 aa)    
Predicted Functional Partners:
Noca_4642
Hypothetical protein.
       0.752
Noca_4643
PFAM: Sigma-70, region 4 type 2; KEGG: rpa:RPA1819 RNA polymerase ECF-type sigma factor, possible FecI.
       0.752
Noca_4644
Hypothetical protein.
       0.752
Noca_4646
PFAM: protein of unknown function DUF488; KEGG: nha:Nham_3631 protein of unknown function DUF488.
       0.597
Noca_0015
PFAM: phospholipid/glycerol acyltransferase; KEGG: fal:FRAAL0743 hypothetical protein; putative signal peptide; putative acyltransferase domain.
 
   
 0.588
Noca_4640
KEGG: btk:BT9727_2577 hypothetical protein.
       0.542
Noca_4641
Hypothetical protein.
       0.542
Noca_4647
PFAM: NC domain protein; KEGG: syf:Synpcc7942_2528 hypothetical protein.
  
    0.464
Noca_4648
PFAM: GtrA family protein; KEGG: tfu:Tfu_2548 hypothetical protein.
       0.412
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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