Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Noca_4648PFAM: GtrA family protein; KEGG: tfu:Tfu_2548 hypothetical protein. (165 aa)    
Predicted Functional Partners:
Noca_4647
PFAM: NC domain protein; KEGG: syf:Synpcc7942_2528 hypothetical protein.
       0.690
Noca_4646
PFAM: protein of unknown function DUF488; KEGG: nha:Nham_3631 protein of unknown function DUF488.
       0.523
Noca_2916
KEGG: sma:SAV2411 DNA-binding protein.
  
     0.520
Noca_1984
KEGG: sco:SCO2391 hypothetical protein.
  
     0.511
Noca_0934
KEGG: sma:SAV5684 hypothetical protein.
 
    0.427
Noca_4645
PFAM: Patatin; KEGG: rha:RHA1_ro01898 possible lipid acyl hydrolase.
       0.412
Noca_4642
Hypothetical protein.
       0.403
Noca_4643
PFAM: Sigma-70, region 4 type 2; KEGG: rpa:RPA1819 RNA polymerase ECF-type sigma factor, possible FecI.
       0.403
Noca_4644
Hypothetical protein.
       0.403
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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