STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_4667KEGG: sco:SCO4220 hypothetical protein. (137 aa)    
Predicted Functional Partners:
Noca_4666
KEGG: mbo:Mb0689 endonuclease IV; PFAM: Xylose isomerase domain protein TIM barrel; SMART: AP endonuclease, family 2.
       0.773
Noca_1196
PFAM: protein of unknown function DUF664; KEGG: sma:SAV7047 hypothetical protein.
 
     0.584
Noca_4348
KEGG: sco:SCO3647 hypothetical protein.
  
     0.582
Noca_2107
PFAM: protein of unknown function DUF664; KEGG: sco:SCO2990 hypothetical protein.
 
     0.560
Noca_4615
KEGG: sco:SCO4674 hypothetical protein.
 
  
 0.546
Noca_4323
PFAM: protein of unknown function UPF0074; Helix-turn-helix, type 11 domain protein; KEGG: fal:FRAAL3900 putative DeoR-family transcriptional regulator.
 
    0.492
Noca_4413
PFAM: lipolytic enzyme, G-D-S-L family; KEGG: lxx:Lxx11940 hypothetical protein.
 
     0.466
mca
LmbE family protein; A mycothiol (MSH, N-acetylcysteinyl-glucosaminyl-inositol) S- conjugate amidase, it recycles conjugated MSH to the N-acetyl cysteine conjugate (AcCys S-conjugate, a mercapturic acid) and the MSH precursor. Involved in MSH-dependent detoxification of a number of alkylating agents and antibiotics; Belongs to the MshB deacetylase family. Mca subfamily.
  
     0.443
Noca_1854
PFAM: protein of unknown function DUF6, transmembrane; KEGG: mmc:Mmcs_1118 protein of unknown function DUF6, transmembrane.
 
     0.435
Noca_4665
PFAM: protein kinase; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: sco:SCO3860 serine/threonine protein kinase.
       0.404
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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