Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Noca_4670PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; KEGG: sco:SCO6995 protease. (531 aa)    
Predicted Functional Partners:
Noca_4669
PFAM: Tetratricopeptide TPR_2 repeat protein; KEGG: sco:SCO6994 hypothetical protein.
 
     0.942
Noca_4672
PFAM: sigma-70 region 2 domain protein; KEGG: sco:SCO6996 RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
 
     0.940
Noca_4671
Hypothetical protein.
 
     0.859
Noca_2675
PFAM: pentapeptide repeat protein.
  
     0.510
Noca_4673
PFAM: Methicillin resistance protein; KEGG: sco:SCO3593 hypothetical protein.
       0.498
Noca_4674
PFAM: alanine racemase domain protein; KEGG: sco:SCO3903 hypothetical protein.
       0.498
Noca_4668
Hypothetical protein.
       0.490
Noca_2699
KEGG: mpa:MAP4216 hypothetical protein.
  
     0.466
Noca_3233
PFAM: protein of unknown function RIO1; KEGG: eba:ebA56 RIO-type serine/threonine protein kinase.
  
     0.461
Noca_4666
KEGG: mbo:Mb0689 endonuclease IV; PFAM: Xylose isomerase domain protein TIM barrel; SMART: AP endonuclease, family 2.
  
     0.455
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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