STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_4677PFAM: transcriptional regulator PadR family protein; KEGG: sma:SAV4295 transcriptional regulator PadR-like family. (203 aa)    
Predicted Functional Partners:
Noca_4678
PFAM: Myo-inositol-1-phosphate synthase; Myo-inositol-1-phosphate synthase, GAPDH domain protein; KEGG: tfu:Tfu_3099 myo-inositol-1-phosphate synthase.
 
   
 0.875
Noca_4676
PFAM: glycosyl transferase, family 51; penicillin-binding protein, transpeptidase; KEGG: pac:PPA0126 putative penicillin-binding protein.
       0.641
Noca_4675
KEGG: sco:SCO3902 integral membrane protein.
       0.639
Noca_2636
KEGG: fal:FRAAL2865 hypothetical protein.
  
     0.540
whiB-3
Transcription factor WhiB; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA.
  
     0.451
Noca_3132
KEGG: rha:RHA1_ro05908 hypothetical protein.
  
    0.448
Noca_3931
PFAM: major facilitator superfamily MFS_1; KEGG: sco:SCO4329 integral membrane protein.
 
     0.431
Noca_4253
KEGG: fra:Francci3_0454 conserved hypothetical protein.
  
     0.415
Noca_1470
KEGG: sma:SAV3097 hypothetical protein.
  
     0.411
Noca_0362
TIGRFAM: HAD-superfamily hydrolase, subfamily IB (PSPase-like); HAD-superfamily subfamily IB hydrolase, TIGR01490; KEGG: sco:SCO3558 morphological differentiation-associated protein.
  
     0.402
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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