Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-expression
Experiments
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[Homology]
Score
Noca_4680PFAM: protein of unknown function DUF853, NPT hydrolase putative; KEGG: sma:SAV4175 hypothetical protein. (529 aa)    
Predicted Functional Partners:
Noca_2562
PFAM: protein of unknown function, zinc metallopeptidase putative; KEGG: mmc:Mmcs_2304 protein of unknown function, zinc metallopeptidase putative.
 
     0.668
Noca_4681
HDIG domain protein; KEGG: sma:SAV4299 putative RNA nucleotidyltransferase; TIGRFAM: metal dependent phophohydrolase; HDIG domain protein; PFAM: Polynucleotide adenylyltransferase region; metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.
       0.548
Noca_4682
KEGG: sco:SCO3895 hypothetical protein.
  
    0.467
Noca_4683
TIGRFAM: integral membrane protein MviN; PFAM: polysaccharide biosynthesis protein; virulence factor MVIN family protein; KEGG: sma:SAV4052 transmembrane protein.
     
 0.430
infB
Bacterial translation initiation factor 2 (bIF-2); One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily.
   
   0.413
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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