STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_4686Hypothetical protein. (255 aa)    
Predicted Functional Partners:
Noca_4685
RNA polymerase, sigma subunit, ECF family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: sma:SAV4303 putative RNA polymerase ECF-subfamily sigma factor.
   
   0.731
Noca_4684
SMART: serine/threonine protein kinase; KEGG: pac:PPA2303 probable serine-threonine protein kinase.
       0.637
Noca_4687
TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: sco:SCO3890 thioredoxin reductase (NADPH).
       0.568
Noca_4682
KEGG: sco:SCO3895 hypothetical protein.
  
    0.482
Noca_4683
TIGRFAM: integral membrane protein MviN; PFAM: polysaccharide biosynthesis protein; virulence factor MVIN family protein; KEGG: sma:SAV4052 transmembrane protein.
       0.479
Noca_4688
TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: sma:SAV4306 putative thioredoxin; Belongs to the thioredoxin family.
  
    0.475
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.