STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gene:10741192Putative helicase; Belongs to the helicase family. UvrD subfamily. (1024 aa)    
Predicted Functional Partners:
BAC17601.1
Putative ATP-dependent DNA helicase; CE0791, similar to AL021646-46|CAA16666.1| percent identity: 43 in 1075 aa; Belongs to the helicase family. UvrD subfamily.
 
 
   0.999
gene:10741196
DNA helicase.
 
 
   0.928
BAC17599.1
Conserved hypothetical protein; CE0789, similar to AX065623-1|CAC26051.1| percent identity: 74 in 254 aa.
 
     0.863
gene:10741190
DUF3152 domain-containing protein.
       0.788
gene:10741194
RCK N-terminal domain-containing protein.
       0.780
BAC17603.1
Putative NADH pyrophosphatase; CE0793, similar to AK002641-1|BAB22253.1| percent identity: 26 in 223 aa.
       0.780
BAC17597.1
Conserved hypothetical protein; CE0787, similar to AL390975-32|CAC01370.1| percent identity: 44 in 72 aa.
       0.755
BAC18825.1
Putative DNA polymerase III epsilon subunit; CE2015, similar to AE005827-2|AAK23502.1| percent identity: 32 in 209 aa.
  
  
 0.752
BAC16813.1
Putative DNA polymerase III beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initi [...]
 
 
 0.712
BAC17595.1
Conserved hypothetical protein; CE0785, similar to Z95120-10|CAB08304.1| percent identity: 28 in 397 aa.
 
 
 
 0.706
Your Current Organism:
Corynebacterium efficiens
NCBI taxonomy Id: 196164
Other names: C. efficiens YS-314, Corynebacterium efficiens DSM 44549, Corynebacterium efficiens JCM 11189, Corynebacterium efficiens YS-314, Corynebacterium efficiens str. YS-314, Corynebacterium efficiens strain YS-314
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.