STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAC18604.1Conserved hypothetical protein; CE1794, similar to Z96072-1|CAB09496.1| percent identity: 55 in 201 aa. (205 aa)    
Predicted Functional Partners:
gene:10742223
HRDC domain-containing protein.
 
    0.936
BAC18602.1
Conserved hypothetical protein; CE1792, similar to Z80225-46|CAB02369.1| percent identity: 54 in 233 aa.
 
     0.804
rbpA
Conserved hypothetical protein; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters. Belongs to the RNA polymerase-binding protein RbpA family.
  
     0.746
BAC18911.1
Conserved hypothetical protein; CE2101, similar to AX066609-1|CAC26532.1| percent identity: 86 in 259 aa.
  
     0.713
gene:10742229
Uncharacterized protein.
  
     0.679
BAC18386.1
Conserved hypothetical protein; CE1576, similar to Z78020-17|CAB01472.1| percent identity: 70 in 186 aa.
  
     0.661
lpqB
Lipoprotein LpqB.
  
     0.648
gene:10742923
SCP_3 domain-containing protein.
  
     0.647
whiA
Conserved hypothetical protein; Involved in cell division and chromosome segregation.
  
     0.646
gene:10741200
Uncharacterized protein.
  
     0.613
Your Current Organism:
Corynebacterium efficiens
NCBI taxonomy Id: 196164
Other names: C. efficiens YS-314, Corynebacterium efficiens DSM 44549, Corynebacterium efficiens JCM 11189, Corynebacterium efficiens YS-314, Corynebacterium efficiens str. YS-314, Corynebacterium efficiens strain YS-314
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.