STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gene:10742813Putative transcription regulator. (389 aa)    
Predicted Functional Partners:
uxaC
Putative uronate isomerase; CE2377, similar to AF331922-5|AAK01134.1| percent identity: 44 in 462 aa.
 
  
 0.819
gene:10742815
Putative oxidoreductase.
 
   
 0.790
gene:10740407
Putative transcription regulator.
  
     0.773
gltB
Glutamate synthase large subunit; CE0158, similar to D85230-3|BAA12741.1| percent identity: 53 in 1495 aa.
    
 
 0.715
BAC18640.1
Putative PTS phosphohistidine-containing protein; CE1830, similar to AX151741-1|CAC42595.1| percent identity: 91 in 89 aa.
 
 
 
 0.644
BAC19189.1
Putative beta-glucuronidase; CE2379, similar to AJ298137-2|CAC43287.1| percent identity: 46 in 455 aa; Belongs to the glycosyl hydrolase 2 family.
 
   
 0.590
rbsK
Putative ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.
  
 0.575
glsA
Putative glutaminase; CE2375, similar to Z81465-5|CAC42253.1| percent identity: 36 in 335 aa; Belongs to the glutaminase family.
       0.538
BAC19191.1
Putative glucuronide carrier protein; CE2381, similar to D90805-5|BAA15367.1| percent identity: 38 in 246 aa.
 
   
 0.524
ptsM
PTS glucose-specific IIABC; CE1458, similar to L18875-1|AAA22992.1| percent identity: 83 in 687 aa.
  
  
 0.509
Your Current Organism:
Corynebacterium efficiens
NCBI taxonomy Id: 196164
Other names: C. efficiens YS-314, Corynebacterium efficiens DSM 44549, Corynebacterium efficiens JCM 11189, Corynebacterium efficiens YS-314, Corynebacterium efficiens str. YS-314, Corynebacterium efficiens strain YS-314
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