STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gene:10742960Putative ABC transporter ATP-binding protein. (229 aa)    
Predicted Functional Partners:
BAC19324.1
Conserved hypothetical protein; CE2514, similar to AP001511-279|BAB05109.1| percent identity: 28 in 265 aa.
 
 
 0.998
BAC19322.1
Conserved hypothetical protein; CE2512, similar to AL583918-43|CAC29845.1| percent identity: 28 in 289 aa.
 
  
 0.995
BAC18990.1
Putative ferric uptake regulation protein; CE2180, similar to AE000739-6|AAC07373.1| percent identity: 30 in 138 aa; Belongs to the Fur family.
  
  
 0.609
gene:10742958
Putative regulatory protein.
       0.599
tetA
ABC transporter TetA; CE1647, similar to U21300-3|AAC95479.1| percent identity: 40 in 520 aa.
  
     0.493
crgA
Conserved hypothetical protein; Involved in cell division; Belongs to the CrgA family.
  
     0.471
BAC18790.1
Putative ABC transporter ATP-binding protein; CE1980, similar to AX066737-1|CAC26596.1| percent identity: 57 in 548 aa.
  
     0.467
tsaD
Putative o-sialoglycoprotein endopeptidase; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family.
  
     0.457
BAC17461.1
Putative regulatory protein; CE0651, similar to AE005005-3|AAG19060.1| percent identity: 36 in 215 aa.
  
  
 0.418
tetB
ABC transporter TetB; CE1646, similar to AL109974-12|CAB53323.1| percent identity: 33 in 599 aa.
  
     0.407
Your Current Organism:
Corynebacterium efficiens
NCBI taxonomy Id: 196164
Other names: C. efficiens YS-314, Corynebacterium efficiens DSM 44549, Corynebacterium efficiens JCM 11189, Corynebacterium efficiens YS-314, Corynebacterium efficiens str. YS-314, Corynebacterium efficiens strain YS-314
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