STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gene:10743376Uncharacterized protein. (238 aa)    
Predicted Functional Partners:
BAC19735.1
Conserved hypothetical protein; CE2925, similar to AE004410-2|AAF96716.1| percent identity: 26 in 110 aa.
 
  
 0.988
BAC19737.1
Conserved hypothetical protein; CE2927, similar to AX064849-1|CAC25664.1| percent identity: 84 in 201 aa; Belongs to the UPF0301 (AlgH) family.
       0.755
gene:10743378
Putative tRNA nucleotidyltransferase; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.
       0.755
BAC19739.1
Conserved hypothetical protein; CE2929, similar to AE007193-8|AAK48392.1| percent identity: 46 in 231 aa; Belongs to the Nudix hydrolase family.
       0.632
gene:10743380
Uncharacterized protein.
       0.632
BAC19741.1
Putative membrane protein; CE2931, similar to AX064311-1|CAC25396.1| percent identity: 72 in 1005 aa.
       0.580
gene:10743382
Putative RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
       0.481
BAC19743.1
Putative thioredoxin reductase; CE2933, similar to AF023161-1|AAB80939.1| percent identity: 68 in 312 aa.
       0.443
gene:10743384
Thioredoxin; Belongs to the thioredoxin family.
       0.423
BAC19745.1
Putative hydrolase; CE2935, similar to AL583926-106|CAC32236.1| percent identity: 50 in 400 aa.
       0.402
Your Current Organism:
Corynebacterium efficiens
NCBI taxonomy Id: 196164
Other names: C. efficiens YS-314, Corynebacterium efficiens DSM 44549, Corynebacterium efficiens JCM 11189, Corynebacterium efficiens YS-314, Corynebacterium efficiens str. YS-314, Corynebacterium efficiens strain YS-314
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