STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BS637_04010Serine/threonine protein phosphatase. (228 aa)    
Predicted Functional Partners:
BS637_04005
Flagellar biogenesis protein.
  
    0.925
BS637_04000
Uncharacterized protein.
       0.803
BS637_07440
Uncharacterized protein.
 
     0.541
BS637_04020
GTP pyrophosphokinase.
       0.431
BS637_00335
Putative pre-16S rRNA nuclease; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family.
   
    0.412
rho
Transcription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template.
   
    0.412
Your Current Organism:
Clostridium tepidum
NCBI taxonomy Id: 1962263
Other names: C. tepidum, Clostridium sp. DSM 18688, Clostridium sp. IEH 97212, Clostridium sp. PE, Clostridium tepidum Dobritsa et al. 2017, DSM 104389, NRRL B-65463, strain IEH 97212
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.