STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BS637_13410Amino acid permease. (469 aa)    
Predicted Functional Partners:
BS637_02155
Alpha,alpha-phosphotrehalase.
   
 0.753
BS637_02710
Alpha-amylase.
   
 0.753
nadE
Glutamine-dependent NAD(+) synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
    
 0.654
BS637_10900
Protein kinase.
    
 0.570
BS637_06550
Two-component system response regulator.
  
 
 0.478
BS637_12900
Threonine ammonia-lyase.
  
  0.450
aroE
Shikimate dehydrogenase (NADP(+)); Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA).
   
 0.438
Your Current Organism:
Clostridium tepidum
NCBI taxonomy Id: 1962263
Other names: C. tepidum, Clostridium sp. DSM 18688, Clostridium sp. IEH 97212, Clostridium sp. PE, Clostridium tepidum Dobritsa et al. 2017, DSM 104389, NRRL B-65463, strain IEH 97212
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.