STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xynA_1Beta-xylosidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 43 family. (543 aa)    
Predicted Functional Partners:
xynA_2
Endo-1,4-beta-xylanase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.828
KUN49911.1
Beta-galactosidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 2 family.
 
  
  0.826
KUN45967.1
alpha-N-arabinofuranosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.770
yicI
Family 31 glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 31 family.
 
   
 0.735
KUN48838.1
Beta-galactosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
  0.709
KUN41460.1
Alpha-xylosidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 31 family.
 
   
 0.709
KUN44762.1
Arabinogalactan endo-1,4-beta-galactosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.688
lacZ_2
Beta-galactosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
  0.665
lacZ_1
Beta-galactosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
  0.662
KUN46862.1
Glycosyl hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
  0.647
Your Current Organism:
Streptomyces olivochromogenes
NCBI taxonomy Id: 1963
Other names: ATCC 25479, ATCC 3336, Actinomyces olivochromogenus, CBS 889.69, DSM 40451, IFO 13067, IFO 3178, IMET 40352, ISP 5451, JCM 4163, JCM 4500, KCTC 9064, NBRC 13067, NBRC 3178, NRRL-ISP 5451, S. olivochromogenes, Streptomyces olivichromogenes, Streptomyces olivochromogenus
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