STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KUN49532.1Phytoene dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (471 aa)    
Predicted Functional Partners:
KUN49533.1
Squalene synthase HpnD; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.984
KUN49534.1
Squalene synthase HpnC; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.978
KUN49530.1
Squalene-hopene cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.936
KUN49529.1
1-hydroxy-2-methyl-2-butenyl 4-diphosphate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.931
KUN49528.1
Radical SAM protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.929
KUN49531.1
Dimethylallyltranstransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the FPP/GGPP synthase family.
 
   
 0.912
KUN49525.1
Aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
       0.712
KUN49537.1
Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.641
KUN49538.1
Transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.641
KUN49539.1
Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.629
Your Current Organism:
Streptomyces olivochromogenes
NCBI taxonomy Id: 1963
Other names: ATCC 25479, ATCC 3336, Actinomyces olivochromogenus, CBS 889.69, DSM 40451, IFO 13067, IFO 3178, IMET 40352, ISP 5451, JCM 4163, JCM 4500, KCTC 9064, NBRC 13067, NBRC 3178, NRRL-ISP 5451, S. olivochromogenes, Streptomyces olivichromogenes, Streptomyces olivochromogenus
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