Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
KUN48179.1Pectate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology. (276 aa)    
Predicted Functional Partners:
KUN49842.1
Pectate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.961
KUN48169.1
Pectate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.938
pel
Pectate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.937
KUN48171.1
Pectin esterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.918
KUN48170.1
Pectin esterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.912
xynA_2
Endo-1,4-beta-xylanase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.899
KUN49841.1
Pectate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.850
KUN43491.1
Rhamnogalacturonase B precursor; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.785
KUN48180.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.763
KUN48181.1
RNA polymerase subunit sigma; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.
  
    0.763
Your Current Organism:
Streptomyces olivochromogenes
NCBI taxonomy Id: 1963
Other names: ATCC 25479, ATCC 3336, Actinomyces olivochromogenus, CBS 889.69, DSM 40451, IFO 13067, IFO 3178, IMET 40352, ISP 5451, JCM 4163, JCM 4500, KCTC 9064, NBRC 13067, NBRC 3178, NRRL-ISP 5451, S. olivochromogenes, Streptomyces olivichromogenes, Streptomyces olivochromogenus
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