STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KUN47593.1XRE family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (166 aa)    
Predicted Functional Partners:
KUN42894.1
Regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.864
pyrR
Uracil phosphoribosyltransferase; Also displays a weak uracil phosphoribosyltransferase activity which is not physiologically significant.
     
 0.841
whiG
RNA polymerase subunit sigma-70; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
  
   
 0.791
ssgB
Sporulation protein SsgA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.779
ssgB_3
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.763
ssgB_2
Sporulation protein SsgA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.757
ssgB_1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.752
KUN49568.1
Regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.743
KUN45581.1
BldB protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.743
KUN41416.1
Sporulation protein SsgA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.741
Your Current Organism:
Streptomyces olivochromogenes
NCBI taxonomy Id: 1963
Other names: ATCC 25479, ATCC 3336, Actinomyces olivochromogenus, CBS 889.69, DSM 40451, IFO 13067, IFO 3178, IMET 40352, ISP 5451, JCM 4163, JCM 4500, KCTC 9064, NBRC 13067, NBRC 3178, NRRL-ISP 5451, S. olivochromogenes, Streptomyces olivichromogenes, Streptomyces olivochromogenus
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