Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
DFH23_00401 | DFH23_01316 | GCA_000729995_06088 | GCA_000729995_04507 | Unannotated protein; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis. | Unannotated protein. | 0.999 |
DFH23_00401 | DFH23_03392 | GCA_000729995_06088 | GCA_000729995_02246 | Unannotated protein; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis. | Unannotated protein. | 0.991 |
DFH23_00401 | GCA_000729995_00387 | GCA_000729995_06088 | GCA_000729995_00387 | Unannotated protein; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis. | Unannotated protein. | 0.989 |
DFH23_00401 | GCA_000729995_01024 | GCA_000729995_06088 | GCA_000729995_01024 | Unannotated protein; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis. | Unannotated protein. | 0.991 |
DFH23_00401 | rpsC | GCA_000729995_06088 | GCA_000729995_05448 | Unannotated protein; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis. | Unannotated protein; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. | 0.515 |
DFH23_00401 | sbcD | GCA_000729995_06088 | GCA_000729995_04847 | Unannotated protein; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis. | Unannotated protein; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family. | 0.996 |
DFH23_01316 | DFH23_00401 | GCA_000729995_04507 | GCA_000729995_06088 | Unannotated protein. | Unannotated protein; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis. | 0.999 |
DFH23_01316 | DFH23_03392 | GCA_000729995_04507 | GCA_000729995_02246 | Unannotated protein. | Unannotated protein. | 0.982 |
DFH23_01316 | GCA_000729995_00387 | GCA_000729995_04507 | GCA_000729995_00387 | Unannotated protein. | Unannotated protein. | 0.971 |
DFH23_01316 | GCA_000729995_01024 | GCA_000729995_04507 | GCA_000729995_01024 | Unannotated protein. | Unannotated protein. | 0.982 |
DFH23_01316 | rpsC | GCA_000729995_04507 | GCA_000729995_05448 | Unannotated protein. | Unannotated protein; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. | 0.402 |
DFH23_01316 | sbcD | GCA_000729995_04507 | GCA_000729995_04847 | Unannotated protein. | Unannotated protein; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family. | 0.886 |
DFH23_02427 | DFH23_02662 | GCA_000729995_09118 | GCA_000729995_07997 | Unannotated protein. | Unannotated protein. | 0.807 |
DFH23_02427 | DFH23_02889 | GCA_000729995_09118 | GCA_000729995_07794 | Unannotated protein. | Unannotated protein. | 0.822 |
DFH23_02427 | DFH23_03392 | GCA_000729995_09118 | GCA_000729995_02246 | Unannotated protein. | Unannotated protein. | 0.480 |
DFH23_02427 | DFH23_04203 | GCA_000729995_09118 | GCA_000729995_08508 | Unannotated protein. | Unannotated protein. | 0.941 |
DFH23_02427 | GCA_000729995_00387 | GCA_000729995_09118 | GCA_000729995_00387 | Unannotated protein. | Unannotated protein. | 0.968 |
DFH23_02427 | GCA_000729995_01024 | GCA_000729995_09118 | GCA_000729995_01024 | Unannotated protein. | Unannotated protein. | 0.480 |
DFH23_02662 | DFH23_02427 | GCA_000729995_07997 | GCA_000729995_09118 | Unannotated protein. | Unannotated protein. | 0.807 |
DFH23_02662 | DFH23_02889 | GCA_000729995_07997 | GCA_000729995_07794 | Unannotated protein. | Unannotated protein. | 0.786 |
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