STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DFH23_06515Unannotated protein. (339 aa)    
Predicted Functional Partners:
DFH23_06514
Unannotated protein.
       0.777
DFH23_01376
Unannotated protein; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
   
    0.653
DFH23_01565
Unannotated protein; Belongs to the peptidase A24 family.
  
     0.652
GCA_000729995_04133
Unannotated protein.
  
     0.641
GCA_000729995_02306
Unannotated protein.
  
     0.632
GCA_000729995_02527
Unannotated protein.
  
     0.627
DFH23_04008
Unannotated protein.
  
     0.611
DFH23_09255
Unannotated protein.
  
     0.611
DFH23_00224
Unannotated protein.
  
     0.597
DFH23_06516
Unannotated protein; Belongs to the LysR transcriptional regulatory family.
 
     0.590
Your Current Organism:
Caballeronia sordidicola
NCBI taxonomy Id: 196367
Other names: Burkholderia sordidicola, Burkholderia sp. KOPRI26592, Burkholderia sp. KOPRI26633, Burkholderia sp. PAMC 26510, Burkholderia sp. PAMC 26577, C. sordidicola, CCUG 49583, Caballeronia sordidicola (Lim et al. 2003) Dobritsa and Samadpour 2016, JCM 11778, KCTC 12081, Paraburkholderia sordidicola, Paraburkholderia sordidicola (Lim et al. 2003) Sawana et al. 2015, strain S5-B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.