STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000729995_05048Unannotated protein. (475 aa)    
Predicted Functional Partners:
DFH23_01029
Unannotated protein.
    
 0.744
GCA_000729995_01490
Unannotated protein.
  
 
 0.647
GCA_000729995_01485
Unannotated protein.
   
 
 0.634
GCA_000729995_06592
Unannotated protein.
   
 
 0.634
GCA_000729995_01489
Unannotated protein.
   
 
 0.542
DFH23_04903
Unannotated protein.
    
   0.540
DFH23_08978
Unannotated protein.
  
  
 
0.453
DFH23_07513
Unannotated protein.
  
  
 
0.450
GCA_000729995_00383
Unannotated protein.
  
  
 
0.447
DFH23_05367
Unannotated protein.
  
  
 
0.447
Your Current Organism:
Caballeronia sordidicola
NCBI taxonomy Id: 196367
Other names: Burkholderia sordidicola, Burkholderia sp. KOPRI26592, Burkholderia sp. KOPRI26633, Burkholderia sp. PAMC 26510, Burkholderia sp. PAMC 26577, C. sordidicola, CCUG 49583, Caballeronia sordidicola (Lim et al. 2003) Dobritsa and Samadpour 2016, JCM 11778, KCTC 12081, Paraburkholderia sordidicola, Paraburkholderia sordidicola (Lim et al. 2003) Sawana et al. 2015, strain S5-B
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.