STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000729995_07094Unannotated protein. (179 aa)    
Predicted Functional Partners:
GCA_000729995_07097
Unannotated protein.
  
    0.703
DFH23_04791
Unannotated protein.
  
    0.596
DFH23_03029
Unannotated protein.
 
    0.577
GCA_000729995_08419
Unannotated protein.
 
     0.576
DFH23_04794
Unannotated protein.
  
    0.560
GCA_000729995_05340
Unannotated protein.
  
    0.546
DFH23_03832
Unannotated protein.
  
     0.491
DFH23_07213
Unannotated protein.
  
     0.486
DFH23_04792
Unannotated protein; Belongs to the glycosyl hydrolase 13 family.
   
    0.476
DFH23_02612
Unannotated protein; Belongs to the glycosyl hydrolase 13 family.
   
    0.476
Your Current Organism:
Caballeronia sordidicola
NCBI taxonomy Id: 196367
Other names: Burkholderia sordidicola, Burkholderia sp. KOPRI26592, Burkholderia sp. KOPRI26633, Burkholderia sp. PAMC 26510, Burkholderia sp. PAMC 26577, C. sordidicola, CCUG 49583, Caballeronia sordidicola (Lim et al. 2003) Dobritsa and Samadpour 2016, JCM 11778, KCTC 12081, Paraburkholderia sordidicola, Paraburkholderia sordidicola (Lim et al. 2003) Sawana et al. 2015, strain S5-B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.