STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000729995_07147Unannotated protein. (330 aa)    
Predicted Functional Partners:
GCA_000729995_07148
Unannotated protein.
 
  0.990
GCA_000729995_07150
Unannotated protein.
 
  0.985
DFH23_07433
Unannotated protein.
 
  0.962
GCA_000729995_02342
Unannotated protein.
 
  0.962
DFH23_03473
Unannotated protein.
 
 
  0.962
DFH23_00198
Unannotated protein.
 
  0.962
GCA_000729995_07022
Unannotated protein.
 
  0.962
GCA_000729995_07052
Unannotated protein.
 
  0.962
GCA_000729995_07144
Unannotated protein.
 
 
  0.962
DFH23_00172
Unannotated protein.
 
 
  0.962
Your Current Organism:
Caballeronia sordidicola
NCBI taxonomy Id: 196367
Other names: Burkholderia sordidicola, Burkholderia sp. KOPRI26592, Burkholderia sp. KOPRI26633, Burkholderia sp. PAMC 26510, Burkholderia sp. PAMC 26577, C. sordidicola, CCUG 49583, Caballeronia sordidicola (Lim et al. 2003) Dobritsa and Samadpour 2016, JCM 11778, KCTC 12081, Paraburkholderia sordidicola, Paraburkholderia sordidicola (Lim et al. 2003) Sawana et al. 2015, strain S5-B
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.