STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DFH23_02949Unannotated protein. (430 aa)    
Predicted Functional Partners:
GCA_000729995_00209
Unannotated protein.
  
  
 0.938
DFH23_04707
Unannotated protein.
  
  
 0.938
DFH23_00839
Unannotated protein.
  
  
 0.938
DFH23_02950
Unannotated protein.
  
 
 0.849
DFH23_04500
Unannotated protein.
  
 
 0.828
DFH23_06564
Unannotated protein.
  
  
 0.816
DFH23_06185
Unannotated protein.
  
 
 0.776
DFH23_00896
Unannotated protein; Involved in lipopolysaccharide (LPS) biosynthesis. Catalyzes the transfer of 3-deoxy-D-manno-octulosonate (Kdo) residue(s) from CMP- Kdo to lipid IV(A), the tetraacyldisaccharide-1,4'-bisphosphate precursor of lipid A; Belongs to the glycosyltransferase group 1 family.
    
 0.697
DFH23_01766
Unannotated protein; Belongs to the mannose-6-phosphate isomerase type 2 family.
  
  
 0.658
DFH23_00866
Unannotated protein; Belongs to the mannose-6-phosphate isomerase type 2 family.
  
  
 0.658
Your Current Organism:
Caballeronia sordidicola
NCBI taxonomy Id: 196367
Other names: Burkholderia sordidicola, Burkholderia sp. KOPRI26592, Burkholderia sp. KOPRI26633, Burkholderia sp. PAMC 26510, Burkholderia sp. PAMC 26577, C. sordidicola, CCUG 49583, Caballeronia sordidicola (Lim et al. 2003) Dobritsa and Samadpour 2016, JCM 11778, KCTC 12081, Paraburkholderia sordidicola, Paraburkholderia sordidicola (Lim et al. 2003) Sawana et al. 2015, strain S5-B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.