STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000729995_08281Unannotated protein. (128 aa)    
Predicted Functional Partners:
DFH23_00362
Unannotated protein.
     
 0.824
DFH23_07329
Unannotated protein; Belongs to the group II decarboxylase family.
  
 
 0.769
DFH23_01591
Unannotated protein.
  
 
 0.747
DFH23_00012
Unannotated protein; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.
     
 0.739
murI
Unannotated protein; Provides the (R)-glutamate required for cell wall biosynthesis.
    
 0.710
DFH23_08466
Unannotated protein.
     
 0.694
DFH23_02866
Unannotated protein.
     
 0.694
DFH23_08166
Unannotated protein.
     
 0.688
DFH23_03750
Unannotated protein; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
     
 0.687
GCA_000729995_01024
Unannotated protein.
   
 
  0.684
Your Current Organism:
Caballeronia sordidicola
NCBI taxonomy Id: 196367
Other names: Burkholderia sordidicola, Burkholderia sp. KOPRI26592, Burkholderia sp. KOPRI26633, Burkholderia sp. PAMC 26510, Burkholderia sp. PAMC 26577, C. sordidicola, CCUG 49583, Caballeronia sordidicola (Lim et al. 2003) Dobritsa and Samadpour 2016, JCM 11778, KCTC 12081, Paraburkholderia sordidicola, Paraburkholderia sordidicola (Lim et al. 2003) Sawana et al. 2015, strain S5-B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.