STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cgl0052Metallo-beta-lactamase superfamily. (456 aa)    
Predicted Functional Partners:
ybeY
Predicted metal-dependent hydrolase; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.
  
 
 0.966
Cgl1310
Zn-dependent hydrolases, including glyoxylases.
 
0.961
Cgl1648
Zn-dependent hydrolase.
  
 
0.925
dld
D-LACTATE DEHYDROGENASE; Catalyzes the oxidation of D-lactate to pyruvate. Has also weak activity with L-lactate and DL-2-hydroxybutyrate. Electrons derived from D-lactate oxidation enter the electron transport chain. Essential for growth with D-lactate as sole carbon and energy source.
    
 0.906
Cgl0055
Sulfurtransferase.
 
 0.894
Cgl0053
Conserved hypothetical membrane protein.
  
 0.837
rpsQ
30S RIBOSOMAL PROTEIN S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.
   
   0.825
pks
POLYKETIDE SYNTHASE.
  
 
 0.797
truA
PROBABLE TRNA PSEUDOURIDINE SYNTHASE A PROTEIN; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
   
 
 0.771
mraW
S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA.
  
   0.735
Your Current Organism:
Corynebacterium glutamicum
NCBI taxonomy Id: 196627
Other names: C. glutamicum ATCC 13032, Corynebacterium glutamicum ATCC 13032, Corynebacterium glutamicum str. ATCC 13032, Corynebacterium glutamicum strain ATCC 13032
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