STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gabTPROBABLE 4-AMINOBUTYRATE AMINOTRANSFERASE PROTEIN; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (448 aa)    
Predicted Functional Partners:
gabD2
PUTATIVE SUCCINATE-SEMIALDEHYDE DEHYDROGENASE (NADP+); Belongs to the aldehyde dehydrogenase family.
 
 0.994
gabD1
PROBABLE SUCCINATE-SEMIALDEHYDE DEHYDROGENASE OXIDOREDUCTASE; Belongs to the aldehyde dehydrogenase family.
 
 0.974
gabD3
SUCCINATE-SEMIALDEHYDE DEHYDROGENASE (NADP+); Belongs to the aldehyde dehydrogenase family.
 
 0.937
Cgl2441
Aminotransferase class-III, pyridoxal-phosphate dependent; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
  
 
0.925
msmA
PROBABLE ALDEHYDE DEHYDROGENASE.
 
 0.924
Cgl0478
PUTATIVE TRANSCRIPTIONAL REGULATOR.
 
   
 0.923
Cgl0544
NAD-dependent aldehyde dehydrogenase.
  
 0.923
betB
PUTATIVE BETAINE ALDEHYDE DEHYDROGENASE (BADH) OXIDOREDUCTASE.
 
 0.922
xylC
BENZALDEHYDE DEHYDROGENASE; Belongs to the aldehyde dehydrogenase family.
 
 0.922
panD
ASPARTATE 1-DECARBOXYLASE; Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine.
   
 
 0.907
Your Current Organism:
Corynebacterium glutamicum
NCBI taxonomy Id: 196627
Other names: C. glutamicum ATCC 13032, Corynebacterium glutamicum ATCC 13032, Corynebacterium glutamicum str. ATCC 13032, Corynebacterium glutamicum strain ATCC 13032
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.