Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Cgl1922 | Cgl1923 | cg2105 | cg2106 | Conserved hypothetical protein. | CONSERVED HYPOTHETICAL PROTEIN. | 0.604 |
Cgl1922 | Cgl1924 | cg2105 | cg2107 | Conserved hypothetical protein. | Superfamily II DNA or RNA helicase. | 0.472 |
Cgl1923 | Cgl1922 | cg2106 | cg2105 | CONSERVED HYPOTHETICAL PROTEIN. | Conserved hypothetical protein. | 0.604 |
Cgl1923 | Cgl1924 | cg2106 | cg2107 | CONSERVED HYPOTHETICAL PROTEIN. | Superfamily II DNA or RNA helicase. | 0.656 |
Cgl1923 | Cgl2536 | cg2106 | cg2794 | CONSERVED HYPOTHETICAL PROTEIN. | Conserved hypothetical protein. | 0.626 |
Cgl1923 | ctaA | cg2106 | cg1769 | CONSERVED HYPOTHETICAL PROTEIN. | Cytochrome oxidase assembly protein. | 0.570 |
Cgl1923 | mgtE2 | cg2106 | cg0275 | CONSERVED HYPOTHETICAL PROTEIN. | MG2+ TRANSPORTER; Acts as a magnesium transporter. | 0.796 |
Cgl1923 | nucS | cg2106 | cg1371 | CONSERVED HYPOTHETICAL PROTEIN. | Predicted nuclease of the RecB family; Cleaves both 3' and 5' ssDNA extremities of branched DNA structures; Belongs to the NucS endonuclease family. | 0.590 |
Cgl1923 | serC | cg2106 | cg0948 | CONSERVED HYPOTHETICAL PROTEIN. | Phosphoserine Transaminase; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine. | 0.587 |
Cgl1923 | whiB1 | cg2106 | cg0878 | CONSERVED HYPOTHETICAL PROTEIN. | Transcription factor WhiB; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA. | 0.638 |
Cgl1923 | whiB2 | cg2106 | cg0850 | CONSERVED HYPOTHETICAL PROTEIN. | Transcription factor WhiB; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA. | 0.639 |
Cgl1923 | whiB4 | cg2106 | cg0337 | CONSERVED HYPOTHETICAL PROTEIN. | PUTATIVE REGULATORY PROTEIN (WHIB-RELATED PROTEIN); Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA. | 0.572 |
Cgl1924 | Cgl1922 | cg2107 | cg2105 | Superfamily II DNA or RNA helicase. | Conserved hypothetical protein. | 0.472 |
Cgl1924 | Cgl1923 | cg2107 | cg2106 | Superfamily II DNA or RNA helicase. | CONSERVED HYPOTHETICAL PROTEIN. | 0.656 |
Cgl2536 | Cgl1923 | cg2794 | cg2106 | Conserved hypothetical protein. | CONSERVED HYPOTHETICAL PROTEIN. | 0.626 |
ctaA | Cgl1923 | cg1769 | cg2106 | Cytochrome oxidase assembly protein. | CONSERVED HYPOTHETICAL PROTEIN. | 0.570 |
mgtE2 | Cgl1923 | cg0275 | cg2106 | MG2+ TRANSPORTER; Acts as a magnesium transporter. | CONSERVED HYPOTHETICAL PROTEIN. | 0.796 |
nucS | Cgl1923 | cg1371 | cg2106 | Predicted nuclease of the RecB family; Cleaves both 3' and 5' ssDNA extremities of branched DNA structures; Belongs to the NucS endonuclease family. | CONSERVED HYPOTHETICAL PROTEIN. | 0.590 |
nucS | serC | cg1371 | cg0948 | Predicted nuclease of the RecB family; Cleaves both 3' and 5' ssDNA extremities of branched DNA structures; Belongs to the NucS endonuclease family. | Phosphoserine Transaminase; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine. | 0.513 |
nucS | whiB1 | cg1371 | cg0878 | Predicted nuclease of the RecB family; Cleaves both 3' and 5' ssDNA extremities of branched DNA structures; Belongs to the NucS endonuclease family. | Transcription factor WhiB; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA. | 0.743 |
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