STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OQX89054.1Heme ABC exporter ATP-binding protein CcmA; Derived by automated computational analysis using gene prediction method: Protein Homology. (234 aa)    
Predicted Functional Partners:
OQX82824.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.963
OQX89053.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.957
OQX83141.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
      0.899
B6D60_05395
Hypothetical protein; Metagenomic; derived from metagenome: marine sediment metagenome.
 
  
 0.865
OQX86264.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
 0.851
OQX87803.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
 0.800
OQX85245.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
 0.800
OQX82827.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.653
OQX84555.1
Peptide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.
  
 
0.639
OQX87353.1
Cytochrome C assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
  0.622
Your Current Organism:
candidate division KSB1
NCBI taxonomy Id: 1970772
Other names: c. division KSB1 bacterium 4484_87, candidate division KSB1 bacterium 4484_87
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