STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OQY32961.1ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology. (562 aa)    
Predicted Functional Partners:
araD
L-ribulose-5-phosphate 4-epimerase; Catalyzes the isomerization of L-ribulose 5-phosphate to D-xylulose 5-phosphate in the anaerobic catabolism of L-ascorbate; links the arabinose metabolic pathway to the pentose phosphate pathway and allows the bacteria to use arabinose as an energy source; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.736
rhaA
L-rhamnose isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the rhamnose isomerase family.
  
 
 0.689
OQY35328.1
L-rhamnose mutarotase; Involved in the anomeric conversion of L-rhamnose.
  
  
 0.648
OQY32839.1
Transketolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.641
OQY31065.1
Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.612
OQY32962.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.566
OQY34351.1
Transaldolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.543
xylA
Xylose isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the xylose isomerase family.
  
 
 0.531
OQY32403.1
Fucose isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the RbsD / FucU family.
  
 
 0.517
OQY34806.1
Class II aldolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.490
Your Current Organism:
Spirochaetaceae bacterium 457259
NCBI taxonomy Id: 1971727
Other names: S. bacterium 4572_59, Spirochaetaceae bacterium 4572_59
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