STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tll1403Isopentenyl-diphosphate delta-isomerase; Involved in the biosynthesis of isoprenoids. Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its allylic isomer, dimethylallyl diphosphate (DMAPP). (351 aa)    
Predicted Functional Partners:
tlr1041
4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP/MEP pathway for isoprenoid precursor biosynthesis. Belongs to the IspH family.
    
 0.928
crtE
Geranylgeranyl pyrophosphate synthase; ORF_ID:tll0020; Belongs to the FPP/GGPP synthase family.
  
 
 0.923
tll1404
ORF_ID:tll1404; similar to geranylgeranyl bacteriochlorophyll reductase.
  
    0.598
guaA
GMP synthetase; Catalyzes the synthesis of GMP from XMP.
 
  
 0.574
glcD
Glycolate oxidase subunit; ORF_ID:tll1625.
  
 0.509
glcE
Glycolate oxidase subunit; ORF_ID:tll1664.
  
 0.509
tll2180
ORF_ID:tll2180; probable oxidoreductase.
  
 0.509
putA
Proline oxidase; ORF_ID:tlr0416; Belongs to the aldehyde dehydrogenase family.
  
  
 0.491
tll1465
Small subunit of soluble hydrogenase; ORF_ID:tll1465.
  
 0.485
panC
Pantothenate synthetase / cytidylate kinase; Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate. In the C-terminal section; belongs to the cytidylate kinase family. Type 1 subfamily.
  
  
 0.470
Your Current Organism:
Thermosynechococcus elongatus
NCBI taxonomy Id: 197221
Other names: T. elongatus BP-1, Thermosynechococcus elongatus BP-1, Thermosynechococcus elongatus IAM M-273, Thermosynechococcus elongatus NIES-2133, Thermosynechococcus elongatus str. BP-1, Thermosynechococcus elongatus strain BP-1
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